PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02851.1.g00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 116aa    MW: 12573.1 Da    PI: 5.6115
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02851.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind80.62.4e-251479266
                                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT.EEE-- CS
                  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg.Fkkvk 66
                                  Fl+k+ye+++d++++ ++ w+  g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+Y  F++v+
  Zmw_sc02851.1.g00120.1.sm.mk 14 FLSKTYEMVDDPATDAVVAWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTYHtFRQVN 79
                                  9**********************************************************5477765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.4E-24979IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.3E-28979IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-281098IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-221479IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MEGGGGGGSS LPPFLSKTYE MVDDPATDAV VAWTPPGTSF VVANQAEFCR DLLPKYFKHN  60
NFSSFVRQLN TYHTFRQVNP LCPDVSNQLD AMALGKLTQS NGSLQMRISL GDNGTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-244781992Heat shock factor protein 1
5d5v_B3e-244781992Heat shock factor protein 1
5d5v_D3e-244781992Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456359.13e-46hypothetical protein SORBIDRAFT_03g034630
SwissprotQ94J162e-39HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLC5XK404e-46C5XK40_SORBI; Putative uncharacterized protein Sb03g034630
STRINGSb03g034630.11e-45(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394